Saving MultiCellDS data from BioFVM
Note: This is part of a series of “how-to” blog posts to help new users and developers of BioFVM. Introduction A major initiative for my lab has been MultiCellDS: a standard for multicellular data....
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Coarse-graining discrete cell cycle models
Introduction One observation that often goes underappreciated in computational biology discussions is that a computational model is often a model of a model of a model of biology: that is, it’s a...
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A small computational thought experiment
In Macklin (2017), I briefly touched on a simple computational thought experiment that shows that for a group of homogeneous cells, you can observe substantial heterogeneity in cell behavior. This...
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Working with PhysiCell MultiCellDS digital snapshots in Matlab
PhysiCell 1.2.1 and later saves data as a specialized MultiCellDS digital snapshot, which includes chemical substrate fields, mesh information, and a readout of the cells and their phenotypes at...
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